GannetSegment calls an SPM segmentation of the T1-weighted anatomical image, and reports the tissue fractions of the voxel mask generated by GannetCoRegister.  If the segmentation has already been run, the prior output files will be used instead…

GannetQuantify is the final step, combining modeled peak areas from GannetFit and voxel tissue fractions from GannetSegment with preset values for GABA and water relaxation and visibility, to deliver concentration values. Currently several values are…

The single commonest error in Gannet arises from mis-setting the switches onofforder or WaterPositive in GannetPreinitialise.m. These switches correspond respectively to whether the first average is an edit-ON or edit-OFF average, and whether the res...